Skip to main content

Table 1 shRNA sequences

From: A comparison of multiple shRNA expression methods for combinatorial RNAi

r a Target In. b Stem (sense) Loop Te. b Len.
T Tat 56-29 G AAACUGCUUGUACCAAUUGCUAUUGUAAA ACTCGAGA G 70
V Vif 88-29 G UAUAUUUCAAGGAAAGCUAAGGACUGGUU UCTCGAGU - 69
R Vpr 72-29 - GGAACUUAAGAGUGAAGCUGUUAGACAUU ACTCGAGA - 68
U Vpu 158-29 - GCAAUGAGAGUGAAGGAGAAGUAUCAGCA ACTCGAGA - 68
O' Off #1-29 - AAGACAGUCCAACACACGCCACCUGUCUC UCTCGAGU - 68
O" Off #2-29 - AACAGUCUGUCAAAGGUGACCCCUGUCUC UCTCGAGU - 68
T 19 Tat 59-19 - CUGCUUGUACCAAUUGCUA UUCUCGAGA - 50
V 19 Vif 98-19 - GGAAAGCUAAGGACUGGUU UCTCGAGU - 48
  1. a : shRNA abbreviation
  2. b : In. (Initiating)/Te. (Terminating): Extra nucleotides included 5'(the first nt. transcribed) and 3' (the last nt. transcribed prior to 1 or more U termination remnants) in only some sequences (those which were also a part of an overlapping study).